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Molecular pathogenesis of SARS-CoV-2 infection with hPFF-induced PD progression in hESC-derived DA neurons (A) Venn diagram indicating upregulated genes related to hPFF-induced PD progression or hPFF-induced PD progression with SARS-CoV-2 (0.1 MOI) infection. (B) Results of Gene Ontology analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (C) Results of KEGG pathway analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (D) Venn diagram illustrating genes involved in the pathogenesis of hPFF-induced PD progression that are exacerbated by SARS-CoV-2 infection. (E) The results of KEGG pathway analysis employing genes that are exacerbated by SARS-CoV-2 infection among genes involved in hPFF-induced PD progression. (F) Validation of neuronal-apoptosis-related gene expression using quantitative real-time PCR. n = 3, biological replicates. (G) Validation of PD-associating autophagy-related gene expression using quantitative real-time PCR. n = 3, biological repeat. (H) Validation of PD pathogenesis-associated gene expression using quantitative real-time PCR n = 3, biological repeat. (I) Validation of DA neuron functional gene expression levels using quantitative real-time PCR. n = 3, biological repeat, values are mean ± SD, one-way ANOVA. (J) Representative western blot images of LC3A/B and SQSTM1/p62 to analyze autophagic function in human DA neurons. (K) Quantitative graphs of LC3A/B and SQSTM1/p62 from (J). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (L) Representative western blot images of voltage-dependent anion channel (VDAC), succinate dehydrogenase (SDHA), and prohibitins (PHBs) to analyze mitochondrial function in cells. (M) Quantitative graph of VDAC, SDHA, and PHBs from (L). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (N) Representative Western blot images of <t>HSP60,</t> cytochrome c oxidase (COX) IV, and cytochrome c (Cyto C) to analyze mitochondrial function in human DA neurons. (O) Quantitative graphs of HSP60, COX IV, and Cyto C from (N). (P) Fluorescent microscopy images of the lysosomal intracellular activity assay. (Q) Quantitative graph corresponding to the assay results from (P). n = 9, biological repeat, values are mean ± SEM, one-way ANOVA. (R) Results data from the 20S proteasome assay. n = 7, biological repeat, values are mean ± SEM, one-way ANOVA. n.s., non-significance.
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Molecular pathogenesis of SARS-CoV-2 infection with hPFF-induced PD progression in hESC-derived DA neurons (A) Venn diagram indicating upregulated genes related to hPFF-induced PD progression or hPFF-induced PD progression with SARS-CoV-2 (0.1 MOI) infection. (B) Results of Gene Ontology analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (C) Results of KEGG pathway analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (D) Venn diagram illustrating genes involved in the pathogenesis of hPFF-induced PD progression that are exacerbated by SARS-CoV-2 infection. (E) The results of KEGG pathway analysis employing genes that are exacerbated by SARS-CoV-2 infection among genes involved in hPFF-induced PD progression. (F) Validation of neuronal-apoptosis-related gene expression using quantitative real-time PCR. n = 3, biological replicates. (G) Validation of PD-associating autophagy-related gene expression using quantitative real-time PCR. n = 3, biological repeat. (H) Validation of PD pathogenesis-associated gene expression using quantitative real-time PCR n = 3, biological repeat. (I) Validation of DA neuron functional gene expression levels using quantitative real-time PCR. n = 3, biological repeat, values are mean ± SD, one-way ANOVA. (J) Representative western blot images of LC3A/B and SQSTM1/p62 to analyze autophagic function in human DA neurons. (K) Quantitative graphs of LC3A/B and SQSTM1/p62 from (J). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (L) Representative western blot images of voltage-dependent anion channel (VDAC), succinate dehydrogenase (SDHA), and prohibitins (PHBs) to analyze mitochondrial function in cells. (M) Quantitative graph of VDAC, SDHA, and PHBs from (L). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (N) Representative Western blot images of <t>HSP60,</t> cytochrome c oxidase (COX) IV, and cytochrome c (Cyto C) to analyze mitochondrial function in human DA neurons. (O) Quantitative graphs of HSP60, COX IV, and Cyto C from (N). (P) Fluorescent microscopy images of the lysosomal intracellular activity assay. (Q) Quantitative graph corresponding to the assay results from (P). n = 9, biological repeat, values are mean ± SEM, one-way ANOVA. (R) Results data from the 20S proteasome assay. n = 7, biological repeat, values are mean ± SEM, one-way ANOVA. n.s., non-significance.
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Molecular pathogenesis of SARS-CoV-2 infection with hPFF-induced PD progression in hESC-derived DA neurons (A) Venn diagram indicating upregulated genes related to hPFF-induced PD progression or hPFF-induced PD progression with SARS-CoV-2 (0.1 MOI) infection. (B) Results of Gene Ontology analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (C) Results of KEGG pathway analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (D) Venn diagram illustrating genes involved in the pathogenesis of hPFF-induced PD progression that are exacerbated by SARS-CoV-2 infection. (E) The results of KEGG pathway analysis employing genes that are exacerbated by SARS-CoV-2 infection among genes involved in hPFF-induced PD progression. (F) Validation of neuronal-apoptosis-related gene expression using quantitative real-time PCR. n = 3, biological replicates. (G) Validation of PD-associating autophagy-related gene expression using quantitative real-time PCR. n = 3, biological repeat. (H) Validation of PD pathogenesis-associated gene expression using quantitative real-time PCR n = 3, biological repeat. (I) Validation of DA neuron functional gene expression levels using quantitative real-time PCR. n = 3, biological repeat, values are mean ± SD, one-way ANOVA. (J) Representative western blot images of LC3A/B and SQSTM1/p62 to analyze autophagic function in human DA neurons. (K) Quantitative graphs of LC3A/B and SQSTM1/p62 from (J). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (L) Representative western blot images of voltage-dependent anion channel (VDAC), succinate dehydrogenase (SDHA), and prohibitins (PHBs) to analyze mitochondrial function in cells. (M) Quantitative graph of VDAC, SDHA, and PHBs from (L). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (N) Representative Western blot images of <t>HSP60,</t> cytochrome c oxidase (COX) IV, and cytochrome c (Cyto C) to analyze mitochondrial function in human DA neurons. (O) Quantitative graphs of HSP60, COX IV, and Cyto C from (N). (P) Fluorescent microscopy images of the lysosomal intracellular activity assay. (Q) Quantitative graph corresponding to the assay results from (P). n = 9, biological repeat, values are mean ± SEM, one-way ANOVA. (R) Results data from the 20S proteasome assay. n = 7, biological repeat, values are mean ± SEM, one-way ANOVA. n.s., non-significance.
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Molecular pathogenesis of SARS-CoV-2 infection with hPFF-induced PD progression in hESC-derived DA neurons (A) Venn diagram indicating upregulated genes related to hPFF-induced PD progression or hPFF-induced PD progression with SARS-CoV-2 (0.1 MOI) infection. (B) Results of Gene Ontology analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (C) Results of KEGG pathway analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (D) Venn diagram illustrating genes involved in the pathogenesis of hPFF-induced PD progression that are exacerbated by SARS-CoV-2 infection. (E) The results of KEGG pathway analysis employing genes that are exacerbated by SARS-CoV-2 infection among genes involved in hPFF-induced PD progression. (F) Validation of neuronal-apoptosis-related gene expression using quantitative real-time PCR. n = 3, biological replicates. (G) Validation of PD-associating autophagy-related gene expression using quantitative real-time PCR. n = 3, biological repeat. (H) Validation of PD pathogenesis-associated gene expression using quantitative real-time PCR n = 3, biological repeat. (I) Validation of DA neuron functional gene expression levels using quantitative real-time PCR. n = 3, biological repeat, values are mean ± SD, one-way ANOVA. (J) Representative western blot images of LC3A/B and SQSTM1/p62 to analyze autophagic function in human DA neurons. (K) Quantitative graphs of LC3A/B and SQSTM1/p62 from (J). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (L) Representative western blot images of voltage-dependent anion channel (VDAC), succinate dehydrogenase (SDHA), and prohibitins (PHBs) to analyze mitochondrial function in cells. (M) Quantitative graph of VDAC, SDHA, and PHBs from (L). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (N) Representative Western blot images of <t>HSP60,</t> cytochrome c oxidase (COX) IV, and cytochrome c (Cyto C) to analyze mitochondrial function in human DA neurons. (O) Quantitative graphs of HSP60, COX IV, and Cyto C from (N). (P) Fluorescent microscopy images of the lysosomal intracellular activity assay. (Q) Quantitative graph corresponding to the assay results from (P). n = 9, biological repeat, values are mean ± SEM, one-way ANOVA. (R) Results data from the 20S proteasome assay. n = 7, biological repeat, values are mean ± SEM, one-way ANOVA. n.s., non-significance.
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atp-binding cassette sub-family d member 3 [labeo rohita]  (Labeo Technologies Inc)
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Molecular pathogenesis of SARS-CoV-2 infection with hPFF-induced PD progression in hESC-derived DA neurons (A) Venn diagram indicating upregulated genes related to hPFF-induced PD progression or hPFF-induced PD progression with SARS-CoV-2 (0.1 MOI) infection. (B) Results of Gene Ontology analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (C) Results of KEGG pathway analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (D) Venn diagram illustrating genes involved in the pathogenesis of hPFF-induced PD progression that are exacerbated by SARS-CoV-2 infection. (E) The results of KEGG pathway analysis employing genes that are exacerbated by SARS-CoV-2 infection among genes involved in hPFF-induced PD progression. (F) Validation of neuronal-apoptosis-related gene expression using quantitative real-time PCR. n = 3, biological replicates. (G) Validation of PD-associating autophagy-related gene expression using quantitative real-time PCR. n = 3, biological repeat. (H) Validation of PD pathogenesis-associated gene expression using quantitative real-time PCR n = 3, biological repeat. (I) Validation of DA neuron functional gene expression levels using quantitative real-time PCR. n = 3, biological repeat, values are mean ± SD, one-way ANOVA. (J) Representative western blot images of LC3A/B and SQSTM1/p62 to analyze autophagic function in human DA neurons. (K) Quantitative graphs of LC3A/B and SQSTM1/p62 from (J). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (L) Representative western blot images of voltage-dependent anion channel (VDAC), succinate dehydrogenase (SDHA), and prohibitins (PHBs) to analyze mitochondrial function in cells. (M) Quantitative graph of VDAC, SDHA, and PHBs from (L). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (N) Representative Western blot images of <t>HSP60,</t> cytochrome c oxidase (COX) IV, and cytochrome c (Cyto C) to analyze mitochondrial function in human DA neurons. (O) Quantitative graphs of HSP60, COX IV, and Cyto C from (N). (P) Fluorescent microscopy images of the lysosomal intracellular activity assay. (Q) Quantitative graph corresponding to the assay results from (P). n = 9, biological repeat, values are mean ± SEM, one-way ANOVA. (R) Results data from the 20S proteasome assay. n = 7, biological repeat, values are mean ± SEM, one-way ANOVA. n.s., non-significance.
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Molecular pathogenesis of SARS-CoV-2 infection with hPFF-induced PD progression in hESC-derived DA neurons (A) Venn diagram indicating upregulated genes related to hPFF-induced PD progression or hPFF-induced PD progression with SARS-CoV-2 (0.1 MOI) infection. (B) Results of Gene Ontology analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (C) Results of KEGG pathway analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (D) Venn diagram illustrating genes involved in the pathogenesis of hPFF-induced PD progression that are exacerbated by SARS-CoV-2 infection. (E) The results of KEGG pathway analysis employing genes that are exacerbated by SARS-CoV-2 infection among genes involved in hPFF-induced PD progression. (F) Validation of neuronal-apoptosis-related gene expression using quantitative real-time PCR. n = 3, biological replicates. (G) Validation of PD-associating autophagy-related gene expression using quantitative real-time PCR. n = 3, biological repeat. (H) Validation of PD pathogenesis-associated gene expression using quantitative real-time PCR n = 3, biological repeat. (I) Validation of DA neuron functional gene expression levels using quantitative real-time PCR. n = 3, biological repeat, values are mean ± SD, one-way ANOVA. (J) Representative western blot images of LC3A/B and SQSTM1/p62 to analyze autophagic function in human DA neurons. (K) Quantitative graphs of LC3A/B and SQSTM1/p62 from (J). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (L) Representative western blot images of voltage-dependent anion channel (VDAC), succinate dehydrogenase (SDHA), and prohibitins (PHBs) to analyze mitochondrial function in cells. (M) Quantitative graph of VDAC, SDHA, and PHBs from (L). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (N) Representative Western blot images of HSP60, cytochrome c oxidase (COX) IV, and cytochrome c (Cyto C) to analyze mitochondrial function in human DA neurons. (O) Quantitative graphs of HSP60, COX IV, and Cyto C from (N). (P) Fluorescent microscopy images of the lysosomal intracellular activity assay. (Q) Quantitative graph corresponding to the assay results from (P). n = 9, biological repeat, values are mean ± SEM, one-way ANOVA. (R) Results data from the 20S proteasome assay. n = 7, biological repeat, values are mean ± SEM, one-way ANOVA. n.s., non-significance.

Journal: Cell Reports Medicine

Article Title: SARS-CoV-2 infection exacerbates the cellular pathology of Parkinson’s disease in human dopaminergic neurons and a mouse model

doi: 10.1016/j.xcrm.2024.101570

Figure Lengend Snippet: Molecular pathogenesis of SARS-CoV-2 infection with hPFF-induced PD progression in hESC-derived DA neurons (A) Venn diagram indicating upregulated genes related to hPFF-induced PD progression or hPFF-induced PD progression with SARS-CoV-2 (0.1 MOI) infection. (B) Results of Gene Ontology analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (C) Results of KEGG pathway analysis using genes upregulated in hPFF-induced PD progression and hPFF-induced PD progression with SARS-CoV-2 infection. (D) Venn diagram illustrating genes involved in the pathogenesis of hPFF-induced PD progression that are exacerbated by SARS-CoV-2 infection. (E) The results of KEGG pathway analysis employing genes that are exacerbated by SARS-CoV-2 infection among genes involved in hPFF-induced PD progression. (F) Validation of neuronal-apoptosis-related gene expression using quantitative real-time PCR. n = 3, biological replicates. (G) Validation of PD-associating autophagy-related gene expression using quantitative real-time PCR. n = 3, biological repeat. (H) Validation of PD pathogenesis-associated gene expression using quantitative real-time PCR n = 3, biological repeat. (I) Validation of DA neuron functional gene expression levels using quantitative real-time PCR. n = 3, biological repeat, values are mean ± SD, one-way ANOVA. (J) Representative western blot images of LC3A/B and SQSTM1/p62 to analyze autophagic function in human DA neurons. (K) Quantitative graphs of LC3A/B and SQSTM1/p62 from (J). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (L) Representative western blot images of voltage-dependent anion channel (VDAC), succinate dehydrogenase (SDHA), and prohibitins (PHBs) to analyze mitochondrial function in cells. (M) Quantitative graph of VDAC, SDHA, and PHBs from (L). n = 3, biological repeat, values are mean ± SEM, one-way ANOVA. (N) Representative Western blot images of HSP60, cytochrome c oxidase (COX) IV, and cytochrome c (Cyto C) to analyze mitochondrial function in human DA neurons. (O) Quantitative graphs of HSP60, COX IV, and Cyto C from (N). (P) Fluorescent microscopy images of the lysosomal intracellular activity assay. (Q) Quantitative graph corresponding to the assay results from (P). n = 9, biological repeat, values are mean ± SEM, one-way ANOVA. (R) Results data from the 20S proteasome assay. n = 7, biological repeat, values are mean ± SEM, one-way ANOVA. n.s., non-significance.

Article Snippet: Rabbit mAb Antibody HSP60 (D6F1) XP®, Heat shock protein family D (Hsp60) member 1 , cell signaling , Cat#12165; RRID: AB_2636980.

Techniques: Infection, Derivative Assay, Biomarker Discovery, Gene Expression, Real-time Polymerase Chain Reaction, Functional Assay, Western Blot, Microscopy, Activity Assay

Journal: Cell Reports Medicine

Article Title: SARS-CoV-2 infection exacerbates the cellular pathology of Parkinson’s disease in human dopaminergic neurons and a mouse model

doi: 10.1016/j.xcrm.2024.101570

Figure Lengend Snippet:

Article Snippet: Rabbit mAb Antibody HSP60 (D6F1) XP®, Heat shock protein family D (Hsp60) member 1 , cell signaling , Cat#12165; RRID: AB_2636980.

Techniques: Recombinant, Binding Assay, Affinity Purification, Virus, Control, Variant Assay, SYBR Green Assay, Sample Prep, TUNEL Assay, Plasmid Preparation, Bicinchoninic Acid Protein Assay, Activity Assay, In Situ, RNA Sequencing, Transgenic Assay, Software